AMBER-based Portal Server for NMR structures (AMPS-NMR)

(including paramagnetic restraints plugin)

Amber (acronym to Assisted Model Building with Energy Refinement) is a suite of programs that allow users to perform molecular dynamics (MD) simulations on biological systems.This web portal makes available the entire functionality of AMBER, in particular (but not only) using NMR-derived information as restraints for MD.

Direct link to the portal.

Reference for use of the AMPS-NMR server:Bioinformatics, 27, 2384-2390 (2011).A Grid-enabled web portal for NMR structure refinement with AMBER.Bertini I, Case DA, Ferella L, Giachetti A, Rosato A.Pubmed link